Palier 1 • Identité NCBI
🦠 NCBI TAXID #645 • SPECIES • Bacteria
🔎 NCBI Certificate #645
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Aeromonas salmonicida "Bacillus salmonicida" (Lehmann and Neumann 1896) Kruse 1896
⚡ 3 active Index-Experts™ pole(s) (O(1) routing) • 🧀 1 linked cheese matrix/matrices • 🧊 5 3D structure(s) RCSB PDB / EBI SIFTS
🌳 Phylogenetic Lineage & Associated Cheese Matrices
Palier 2 • Fromager & Sommelier
Pseudomonadota (phylum)
› Gammaproteobacteria (class)
› Aeromonadales (order)
› Aeromonadaceae (family)
› Aeromonas (genus)
🧀 Linked cheeses, dairy matrices and designations (1) :
🧫 Isolation Substrates, Biological Hosts & Cellar Ecology (NCBI Host)
Palier 3 • Praticien & Affineur
Cheese metagenome (en:cheeses ; en:mozzarella — 4 échantillons)
INDEX-EXPERT™ #01 • Tyrodexia™ Architecture
Palier 5
Synonyms and historical names (NCBI)
🔎 SQLite Proof
| Nomenclature concordance (NCBI) | Aeromonas salmonicida ("Bacillus salmonicida" (Lehmann and Neumann 1896) Kruse 1896) |
|---|---|
| Historical synonyms & basionyms | Bacteria |
| Taxonomic authority & reference strains | "Bacillus salmonicida" (Lehmann and Neumann 1896) Kruse 1896 |
| Official sources & reference book | TaxID:645 • Le grand dictionnaire du microbiome des fromages (https://www.tyrodexia.com/index.html#ouvrage) |
| Lineage & phylogenomic justification | Pseudomonadota (phylum) › Gammaproteobacteria (class) › Aeromonadales (order) › Aeromonadaceae (family) › Aeromonas (genus) |
| PubMed taxonomic references | DOI:10.1016/j.cell.2024.07.039 🔎 (cFMD) • FoodMicrobionet |
INDEX-EXPERT™ #06 • Tyrodexia™ Architecture
Palier 3
Symptoms and manufacturing defects
🔎 SQLite Proof
| Vigilance category & defect diagnosis | Bacteria • Mozzarella [en:mozzarella] |
|---|---|
| Spoilage metabolites & taxonomic lineage | Pseudomonadota (phylum) › Gammaproteobacteria (class) › Aeromonadales (order) › Aeromonadaceae (family) › Aeromonas (genus) |
| Documented substrates & historical synonyms | Cheese metagenome (en:cheeses ; en:mozzarella — 4 échantillons) • "Bacillus salmonicida" (Lehmann and Neumann 1896) Kruse 1896 |
| Official sources & reference book | TaxID:645 • Le manuel clinique des pathologies laitières et fromagères (https://www.tyrodexia.com/index.html#collection) |
| Operator safety & PubMed references | DOI:10.1016/j.cell.2024.07.039 🔎 (cFMD) • FoodMicrobionet |
INDEX-EXPERT™ #08 • Tyrodexia™ Architecture
Palier 4
Pathogens and bioprotection
🔎 SQLite Proof
| Bacteriocins (NPClassifier) & health targets | Flore de vigilance métagénomique (2 éch.) • Bacteria |
|---|---|
| Isolation substrates & linked cheese matrices | Cheese metagenome (en:cheeses ; en:mozzarella — 4 échantillons) • Mozzarella [en:mozzarella] • Pseudomonadota (phylum) › Gammaproteobacteria (class) › Aeromonadales (order) › Aeromonadaceae (family) › Aeromonas (genus) |
| Physicochemical barriers (TDM, moisture, NaCl USDA) | Mozzarella (EST 50.0 %, MNA 64.18 %, NaCl 1.23 g/100g) • "Bacillus salmonicida" (Lehmann and Neumann 1896) Kruse 1896 |
| Official sources & reference book | TaxID:645 • Le manuel clinique des pathologies laitières et fromagères (https://www.tyrodexia.com/index.html#collection) |
| Prophylaxis & PubMed references | DOI:10.1016/j.cell.2024.07.039 🔎 (cFMD) • FoodMicrobionet |
🏛️ Global Culture Collections (DSM / ATCC / CBS), NCBI Synonyms, Strains & FAO DAD-IS Breeds
Palier 4 • Institutionnel & Microbiologiste🧬 RefSeq Genomics, 3D Structural Biology (EBI SIFTS), Metagenomics (cFMD/FMBN) & PubMed
Palier 5 • Expert Absolu| EBI SIFTS / RCSB PDB 3D Structures | PDB #2X3A (5 crystallographic structures • CIF) — RCSB PDB 3D ↗ |
|---|---|
| NCBI RefSeq Genomic Assembly | RefSeq: GCA_028355655.1 • Taille: 4.95481 Mb • GC: 58.6143 % • Statut: Complete Genome |
| PubMed / DOI Primary Literature | DOI:10.1016/j.cell.2024.07.039 🔎 (cFMD) • FoodMicrobionet |
📊 Quantitative Metagenomic Detections (SegataLab/cFMD Cell 2024 & FoodMicrobionet) :